ANDO LAB at CORNELL

Understanding Enzymes to Understand Life

Understanding Enzymes to Understand Life

Software
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  • REGALS: SAXS deconvolution by REGularized Alternating Least Squares (REGALS)
  • MDX-LIB: Tools for processing and simulating macromolecular diffuse scattering (MDX)
  • MDX2: Macromolecular diffuse scattering data reduction in python
  • MIFFI: Automated filtering of cryo-EM micrographs

Data
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Structures and Maps
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  • 8ESS: Myoglobin variant Mb-cIII complex (2023)
  • 8ESU: Myoglobin variant Mb-imi complex (2023)
  • 8G3H: Structure of cobalamin-dependent methionine synthase (MetH) in a resting state (2023)
  • 8DYZ: Hen lysozyme in tetragonal space group at ambient temperature - diffuse scattering dataset (2023)
  • 8DZ7: Hen lysozyme in orthorhombic space group at ambient temperature - diffuse scattering dataset (2023)
  • 7URG: cryo-EM structure of ribonucleotide reductase from Synechococcus phage S-CBP4 bound with TTP (2022)
  • 7SPE: Crystal structure of sperm whale myoglobin variant sMb5(O2beY) (2022)
  • 7SPF: Crystal structure of sperm whale myoglobin variant sMb5(pCaaF) (2022)
  • 7SPG: Crystal structure of sperm whale myoglobin variant sMb13(pCaaF) in space group P212121 (2022)
  • 7SPH: Crystal structure of sperm whale myoglobin variant sMb13(pCaaF) in space group P21 (2022)
  • 6YUK: Dark-operative protochlorophyllide oxidoreductase in the nucleotide-free form (2020)
  • 6O2H: Hen lysozyme in triclinic space group at ambient temperature - diffuse scattering dataset (2020)
  • 6MW3 | EMD-9272: EM structure of Bacillus subtilis ribonucleotide reductase inhibited filament composed of NrdE alpha subunit and NrdF beta subunit with dATP (2019)
  • 6MYX | EMD-9293: EM structure of Bacillus subtilis ribonucleotide reductase inhibited double-helical filament of NrdE alpha subunit with dATP (2019)
  • 6MV9: X-ray crystal structure of Bacillus subtilis ribonucleotide reductase NrdE alpha subunit with TTP and ADP (2019)
  • 6MVE: Reduced X-ray crystal structure of Bacillus subtilis ribonucleotide reductase NrdE alpha subunit with TTP, ATP, and ADP (2019)
  • 6MT9: X-ray crystal structure of Bacillus subtilis ribonucleotide reductase NrdE alpha subunit with TTP, ATP, and ADP (2019)
  • 6M8F: Engineered sperm whale myoglobin-based carbene transferase (2018)
  • 5V1T: Crystal structure of Streptococcus suis SuiB bound to precursor peptide SuiA (2017)
  • 5V1S: Crystal structure of Streptococcus suis SuiB bound to S-adenosylmethionine (2017)
  • 5V1Q: Crystal structure of Streptococcus suis SuiB (2017)